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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "phylepic" in publications use:'
type: software
license: MIT
title: 'phylepic: Combined Visualisation of Phylogenetic and Epidemiological Data'
version: 0.2.1.9000
doi: 10.1017/S0950268824001092
identifiers:
- type: doi
  value: 10.32614/CRAN.package.phylepic
abstract: A collection of utilities and 'ggplot2' extensions to assist with visualisations
  in genomic epidemiology. This includes the 'phylepic' chart, a visual combination
  of a phylogenetic tree and a matched epidemic curve. The included 'ggplot2' extensions
  such as date axes binned by week are relevant for other applications in epidemiology
  and beyond. The approach is described in Suster et al. (2024) <https://doi.org/10.1101/2024.04.02.24305229>.
authors:
- family-names: Suster
  given-names: Carl
  email: Carl.Suster@health.nsw.gov.au
  orcid: https://orcid.org/0000-0001-7021-9380
preferred-citation:
  type: article
  title: Combined visualization of genomic and epidemiological data for outbreaks
  authors:
  - family-names: Suster
    given-names: Carl J. E.
  - family-names: Watt
    given-names: Anne E.
  - family-names: Wang
    given-names: Qinning
  - family-names: Chen
    given-names: Sharon C.-A.
  - family-names: Kok
    given-names: Jen
  - family-names: Sintchenko
    given-names: Vitali
  journal: Epidemiology & Infection
  volume: '152'
  year: '2024'
  doi: 10.1017/S0950268824001092
  start: e110
repository: https://cidm-ph.r-universe.dev
repository-code: https://github.com/cidm-ph/phylepic
commit: c10018066efaf56fee44e83d1e24f25cedccd4ba
url: https://cidm-ph.github.io/phylepic/
contact:
- family-names: Suster
  given-names: Carl
  email: Carl.Suster@health.nsw.gov.au
  orcid: https://orcid.org/0000-0001-7021-9380