Package: phylepic
Title: Combined Visualisation of Phylogenetic and Epidemiological Data
Version: 0.3.0.9000
Authors@R: 
    c(person(given = "Carl",
             family = "Suster",
             email = "carl.suster@sydney.edu.au",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0001-7021-9380")),
      person("Western Sydney Local Health District, NSW Health",
             role = "cph",
             comment = "2024-2025"))
Description: A collection of utilities and 'ggplot2' extensions to
        assist with visualisations in genomic epidemiology. This
        includes the 'phylepic' chart, a visual combination of a
        phylogenetic tree and a matched epidemic curve. The included
        'ggplot2' extensions such as date axes binned by week are
        relevant for other applications in epidemiology and beyond. The
        approach is described in Suster et al. (2024)
        <doi:10.1101/2024.04.02.24305229>.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Imports: ape, cli, cowplot, dplyr, forcats, ggnewscale, ggplot2 (>=
        4.0.0), ggraph, igraph, lifecycle, rlang, scales, tidygraph
URL: https://github.com/cidm-ph/phylepic,
        https://cidm-ph.github.io/phylepic/
BugReports: https://github.com/cidm-ph/phylepic/issues
Config/testthat/edition: 3
Depends: R (>= 4.1)
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libglpk-dev
        libicu-dev libxml2-dev
Repository: https://cidm-ph.r-universe.dev
Date/Publication: 2025-09-12 07:15:07 UTC
RemoteUrl: https://github.com/cidm-ph/phylepic
RemoteRef: HEAD
RemoteSha: d11405e70c3c8e7ef8e37717239ddc2b6301064b
NeedsCompilation: no
Packaged: 2026-06-09 07:49:28 UTC; root
Author: Carl Suster [aut, cre] (ORCID: <https://orcid.org/0000-0001-7021-9380>),
  Western Sydney Local Health District, NSW Health [cph] (2024-2025)
Maintainer: Carl Suster <carl.suster@sydney.edu.au>