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  "Title": "Toolkit for the 'Entrez' API",
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  "Description": "Interact with the 'Entrez' API hosted by the National\nCenter for Biotechnology Information (NCBI),\n<https://www.ncbi.nlm.nih.gov/books/NBK25499/>. This package is\nfocused on working with sequence metadata and links. It handles\npagination and compensates for some API limitations to simplify\nthese tasks. API calls are printed to the console to highlight\nhow high-level queries are translated into individual HTTP\nrequests.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
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  "BugReports": "https://github.com/cidm-ph/jentre/issues",
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  "Repository": "https://cidm-ph.r-universe.dev",
  "Date/Publication": "2026-04-14 06:14:02 UTC",
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      "page": "check_id_set",
      "title": "Check ID set is well formed",
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        "check_id_set",
        "check_web_history",
        "entrez_database"
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      ]
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        "einfo_databases"
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        "elink_map"
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      ]
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        "entrez_request"
      ]
    },
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      ],
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      ]
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      ],
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      ]
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      ]
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        "id_list",
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        "is_web_history",
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    },
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        "topic-process"
      ]
    }
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